Pantothenate Synthetase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-113   ALA-114  7.8 8.0 5.6 -30.5 103.9 106.5 20.9
 ALA-114   ASP-115  10.4 10.5 25.7 11.1 61.3 43.0 65.9
 ASP-115   VAL-116  9.1 10.1 27.2 -84.1 103.1 96.4 36.9
 VAL-116   LEU-117  5.6 8.2 14.5 -6.0 125.9 158.7 -32.8
 LEU-117   GLU-118  6.6 9.1 -11.3 42.0 104.9 64.9 -38.7
 GLU-118   GLY-119  10.2 11.2 -125.1 13.7 99.7 119.2 -119.4
 GLY-119   ALA-120  11.1 12.0 33.7 -10.2 86.7 42.0 20.0
 ALA-120   LYS-121  14.6 13.0 -32.6 -8.9 44.4 68.0 61.3
 LYS-121   ARG-122  15.5 15.2 -16.5 47.2 50.4 60.3 -44.4
 ARG-122   PRO-123  16.4 16.6 26.8 4.5 69.6 62.1 37.6
 PRO-123   GLY-124  16.3 17.5 -9.6 -12.4 59.2 58.1 35.9
 GLY-124   HIS-125  18.0 18.2 -2.7 17.2 9.0 13.2 -38.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-175   ILE-176  1.5 1.2 14.2 -2.0 117.7 109.0 -8.8
 ILE-176   VAL-177  3.0 3.5 -10.1 -24.6 36.0 24.7 89.9
 VAL-177   ARG-178  4.4 4.8 -1.6 -10.4 102.5 95.1 -8.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees