Argonaute

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-120   LYS-121  17.3 12.8 -19.0 42.2 141.2 139.7 72.1
 LYS-121   PHE-122  17.3 12.9 -16.1 75.1 108.4 99.1 133.7
 PHE-122   ARG-123  13.7 9.2 -63.2 -4.0 50.8 57.5 304.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-135   ALA-136  0.4 0.7 -20.8 13.3 81.4 84.2 59.1
 ALA-136   LEU-137  3.4 4.2 -17.0 14.1 38.8 29.7 -9.5
 LEU-137   ILE-138  5.7 6.1 3.4 3.1 80.0 86.4 -20.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-163   GLN-164  6.1 6.9 -37.0 61.8 29.4 29.3 -68.7
 GLN-164   PRO-165  5.8 7.0 -1.0 13.6 60.3 71.6 28.3
 PRO-165   PHE-166  3.8 4.6 -29.1 35.9 31.0 35.3 -66.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-183   ARG-184  16.7 17.1 22.9 12.7 75.6 91.7 75.7
 ARG-184   VAL-185  16.3 16.2 -27.0 8.3 115.7 140.4 -99.0
 VAL-185   LYS-186  14.7 15.6 -30.5 20.2 86.8 90.7 -27.2
 LYS-186   PRO-187  14.5 15.4 10.0 2.9 26.0 24.7 27.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-253   ILE-254  10.7 11.9 -4.2 -32.9 49.5 53.1 217.7
 ILE-254   LEU-255  12.8 13.3 17.5 8.8 162.8 162.9 -207.6
 LEU-255   LYS-256  12.7 13.5 4.8 3.1 115.9 112.3 52.7
 LYS-256   PRO-257  10.1 10.8 -17.2 26.5 30.0 29.5 -35.0
 PRO-257   VAL-258  10.7 11.4 -3.5 12.6 34.5 41.2 -74.7
 VAL-258   LEU-259  10.6 11.2 30.0 -33.7 133.5 130.8 42.0
 LEU-259   THR-260  9.4 9.3 35.1 -51.7 159.8 160.1 58.9
 THR-260   TYR-261  9.6 8.4 130.1 -148.6 108.9 112.7 55.3
 TYR-261   GLU-262  7.0 7.4 52.0 -28.7 92.1 89.5 -5.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-275   VAL-276  5.8 5.6 -15.2 10.0 86.0 79.3 -6.1
 VAL-276   ARG-277  5.8 5.9 20.9 -29.3 155.7 163.0 21.0
 ARG-277   MET-278  6.0 5.6 -58.8 67.2 73.4 66.1 34.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees