Serine/threonine-Protein Kinase B-Raf

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-483   MET-484  8.9 8.7 15.9 -39.7 146.2 137.7 40.0
 MET-484   LEU-485  8.0 7.3 76.3 -72.2 107.3 129.6 -15.5
 LEU-485   ASN-486  6.7 6.4 -42.5 9.4 8.6 35.1 71.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-505   ARG-506  3.2 4.3 -28.1 -0.4 57.2 54.5 43.0
 ARG-506   LYS-507  2.9 2.6 43.5 6.2 170.1 147.4 -107.0
 LYS-507   THR-508  4.1 5.1 -11.0 -9.3 68.6 46.4 36.4
 THR-508   HIS-509  4.2 4.0 39.9 -22.4 104.9 109.2 26.7
 HIS-509   HIS-510  2.4 2.2 -45.0 7.8 36.3 36.3 75.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees