Circadian Clock Protein Kaib

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-42   LYS-43  14.1 14.1 4.8 -8.4 35.2 36.0 -29.0
 LYS-43   VAL-44  11.7 11.6 6.9 -5.2 87.9 87.7 9.4
 VAL-44   ILE-45  8.6 8.5 -2.8 0.8 130.0 130.2 -33.8
 ILE-45   ASP-46  5.9 5.9 2.3 1.9 78.8 76.8 -3.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-62   PRO-63  2.8 2.6 11.1 10.8 12.5 17.7 223.1
 PRO-63   THR-64  3.4 3.2 -40.5 30.9 125.7 122.3 -111.6
 THR-64   LEU-65  1.3 2.1 -4.0 18.2 86.8 75.9 -19.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees