Mediator Of DNA Damage Checkpoint Protein 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-2000   ILE-2001  6.7 6.3 -1.0 0.5 88.8 92.0 22.9
 ILE-2001   TYR-2002  3.2 2.8 -6.5 7.3 137.4 140.3 3.7
 TYR-2002   VAL-2003  3.8 3.3 4.9 -7.3 90.2 89.1 12.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-2009   PRO-2010  9.9 9.3 -9.6 1.9 72.6 83.5 90.0
 PRO-2010   PRO-2011  7.4 6.9 10.9 8.8 70.7 74.0 -6.1
 PRO-2011   PRO-2012  4.0 3.4 -6.2 0.3 58.3 61.6 69.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-2037   VAL-2038  6.0 5.7 4.6 -7.2 100.6 101.9 129.4
 VAL-2038   VAL-2039  2.8 2.4 -10.6 0.0 145.1 141.6 -92.4
 VAL-2039   ILE-2040  3.8 3.6 10.3 -14.9 87.9 88.8 29.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-2056   LEU-2057  8.8 9.1 -5.6 -5.4 56.2 64.4 10.5
 LEU-2057   PRO-2058  6.6 6.4 1.0 7.3 86.8 80.4 -39.5
 PRO-2058   LEU-2059  3.9 3.8 -8.1 -2.3 32.2 34.1 65.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-2076   GLU-2077  4.7 4.6 1.9 -3.5 128.6 132.9 107.7
 GLU-2077   ALA-2078  5.3 4.9 15.0 -17.8 83.5 83.9 49.0
 ALA-2078   PHE-2079  8.9 8.5 8.3 -21.0 35.9 39.5 -93.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees