Autoinducer 2 Sensor Kinase/phosphatase Luxq

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-77   ASN-78  7.4 7.0 5.8 2.4 91.2 90.7 10.2
 ASN-78   SER-79  7.9 7.5 -8.3 -3.0 79.4 73.7 3.9
 SER-79   LYS-80  4.7 4.4 2.5 -8.4 167.3 168.1 63.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-107   PRO-108  16.7 17.6 -15.8 -4.0 23.8 22.2 70.7
 PRO-108   SER-109  16.5 17.4 25.7 -4.2 116.0 122.2 -60.8
 SER-109   HIS-110  15.6 16.6 -15.4 -8.7 111.4 101.1 -23.0
 HIS-110   THR-111  12.6 13.4 53.8 -55.3 88.1 78.9 -71.4
 THR-111   PRO-112  11.2 11.3 3.6 1.0 135.9 133.8 22.9
 PRO-112   GLU-113  7.9 8.1 -12.8 3.3 43.9 46.2 98.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-128   ASN-129  14.1 14.4 -13.2 -1.7 46.0 40.5 218.2
 ASN-129   ALA-130  12.0 12.0 2.6 3.1 132.5 127.5 -56.9
 ALA-130   HIS-131  9.3 9.5 -4.0 -17.3 26.1 22.8 233.4
 HIS-131   PHE-132  11.9 11.8 4.2 -2.0 134.6 140.4 -7.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-133   GLY-134  8.0 8.1 -13.5 13.9 117.3 117.9 12.9
 GLY-134   VAL-135  8.7 8.7 -4.8 3.8 49.3 45.5 9.2
 VAL-135   ASN-136  8.4 8.3 -11.7 3.6 69.6 69.2 16.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TRP-153   TYR-154  6.9 6.8 -3.1 -2.2 50.8 50.0 10.6
 TYR-154   TYR-155  7.1 6.9 -0.1 -7.3 32.7 31.1 60.0
 TYR-155   ILE-156  7.0 6.8 -13.6 14.7 62.6 57.4 -32.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-165   HIS-166  0.6 0.7 -9.3 11.4 56.9 54.4 -4.5
 HIS-166   MET-167  2.7 2.6 -1.3 4.0 27.6 25.7 57.3
 MET-167   LEU-168  2.4 2.3 9.9 -11.3 133.5 133.0 -25.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-189   VAL-190  2.6 2.9 8.8 -11.9 115.5 116.8 -50.1
 VAL-190   VAL-191  5.0 5.2 -1.8 -0.9 18.0 20.4 124.1
 VAL-191   LEU-192  4.9 4.9 4.6 -3.3 113.8 115.6 -13.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees