Lysine, Arginine, Ornithine-Binding Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-88   ALA-89  9.0 8.9 2.6 -0.3 54.1 58.1 5.9
 ALA-89   ALA-90  6.0 5.8 7.5 -22.0 104.5 110.7 18.5
 ALA-90   ASP-91  2.4 2.3 42.5 2.7 71.8 65.7 43.8
 ASP-91   SER-92  3.0 1.8 -8.5 -4.1 54.2 74.0 16.3
 SER-92   ARG-93  5.1 4.4 -21.6 7.3 64.4 62.3 14.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-188   LYS-189  3.5 3.7 -7.1 7.7 59.5 56.7 5.0
 LYS-189   TYR-190  2.4 2.8 -13.0 21.2 126.7 122.3 9.6
 TYR-190   PHE-191  3.5 4.0 -7.8 12.6 141.0 136.8 23.4
 PHE-191   GLY-192  1.1 2.0 0.3 -5.5 99.1 94.9 22.6
 GLY-192   ASP-193  2.3 2.1 9.9 -14.9 70.3 57.0 -0.2
 ASP-193   GLY-194  5.7 4.9 28.9 -9.1 37.2 44.7 19.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees