Ribose Abc Transporter, Periplasmic Ribose- Binding Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-100   GLN-101  17.8 17.8 2.6 0.1 85.1 86.2 -5.1
 GLN-101   ILE-102  15.7 15.6 10.7 -12.8 94.9 96.1 9.0
 ILE-102   TYR-103  12.3 12.2 -13.4 -5.2 103.6 101.0 -78.4
 TYR-103   SER-104  10.1 10.0 11.7 11.0 88.0 69.9 17.9
 SER-104   ASP-105  6.9 6.7 15.3 -0.9 18.8 20.3 136.7
 ASP-105   ASN-106  4.6 4.8 7.7 -1.1 63.0 59.6 51.3
 ASN-106   TYR-107  5.7 5.9 -1.5 -2.0 146.8 143.1 -22.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-241   ILE-242  11.7 11.6 -1.4 3.0 97.2 98.9 13.6
 ILE-242   MET-243  7.9 7.9 -2.7 2.0 144.8 148.0 11.8
 MET-243   GLN-244  6.7 6.8 -5.4 5.3 85.5 88.8 -7.9
 GLN-244   PHE-245  5.5 5.7 3.5 5.4 17.5 13.9 76.9
 PHE-245   PRO-246  4.5 4.7 4.6 0.2 78.2 74.6 7.0
 PRO-246   LYS-247  7.9 8.2 -2.8 0.8 147.7 148.7 -2.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-271   PRO-272  11.6 11.5 -3.8 0.6 83.9 92.2 10.6
 PRO-272   VAL-273  7.9 7.9 -10.0 4.1 35.5 40.6 -8.6
 VAL-273   THR-274  5.7 5.6 8.6 -3.7 70.4 70.4 15.3
 THR-274   VAL-275  2.3 2.2 -2.8 -4.9 68.6 70.4 40.9
 VAL-275   GLU-276  1.5 1.7 -7.1 9.4 92.8 94.5 30.9
 GLU-276   LEU-277  4.7 4.8 5.4 -1.8 73.2 69.6 -4.4
 LEU-277   VAL-278  8.1 8.1 -1.0 0.8 40.0 42.6 11.0
 VAL-278   THR-279  11.0 11.1 2.9 -0.7 59.6 56.9 7.2
 THR-279   ARG-280  14.6 14.6 5.1 8.9 132.3 126.4 -40.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees