Outer Protein Yopm

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-1054   GLY-1055  34.5 35.1 -29.1 24.2 96.7 90.1 149.2
 GLY-1055   GLU-1056  34.5 34.9 -15.1 5.7 101.3 102.8 86.0
 GLU-1056   GLN-1057  30.8 31.2 -3.2 4.2 147.4 147.3 40.8
 GLN-1057   ARG-1058  30.2 30.5 -1.1 6.1 120.2 123.4 12.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-1077   LEU-1078  21.8 21.9 -7.2 0.6 99.4 98.5 147.9
 LEU-1078   ASN-1079  23.4 23.2 -1.3 -6.7 30.7 33.0 111.1
 ASN-1079   ASN-1080  25.3 25.1 3.1 8.4 87.7 88.1 208.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-1081   GLY-1082  28.3 28.7 8.0 0.4 76.0 77.6 239.5
 GLY-1082   LEU-1083  29.0 29.1 1.7 -2.3 111.5 107.4 -561.8
 LEU-1083   SER-1084  26.2 26.3 11.9 -4.8 47.3 47.5 277.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-1088   LEU-1089  15.6 15.5 1.3 -5.0 83.8 84.1 -15.9
 LEU-1089   PRO-1090  14.4 14.2 -0.9 -4.4 139.9 135.4 -191.8
 PRO-1090   PRO-1091  13.3 12.9 -4.7 -22.9 73.1 69.0 -104.6
 PRO-1091   HIS-1092  9.5 9.1 -152.6 171.1 58.8 83.4 -228.6
 HIS-1092   LEU-1093  9.2 8.6 -11.6 -19.4 50.5 63.1 1292.6
 LEU-1093   GLU-1094  12.0 11.8 28.6 -0.4 140.2 147.9 -809.7
 GLU-1094   SER-1095  12.0 12.1 -4.6 1.2 37.9 35.6 99.6
 SER-1095   LEU-1096  14.8 14.6 13.4 -4.7 80.5 73.7 82.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-1099   CYS-1100  22.7 22.5 4.4 12.7 95.3 93.0 185.7
 CYS-1100   ASN-1101  25.8 25.8 -5.4 3.1 45.9 41.6 148.9
 ASN-1101   SER-1102  25.7 25.7 17.6 -20.2 52.8 52.4 -58.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-1109   PRO-1110  9.9 10.0 5.4 4.8 59.2 58.7 72.5
 PRO-1110   GLN-1111  7.6 7.5 -12.0 2.0 55.1 45.4 345.6
 GLN-1111   SER-1112  4.2 4.2 5.3 6.0 88.6 85.9 -141.5
 SER-1112   LEU-1113  6.9 6.5 -5.2 1.4 50.1 44.6 41.9
 LEU-1113   LYS-1114  9.1 8.7 2.7 -1.6 41.5 37.5 41.2
 LEU-1113   LYS-1114  9.1 8.7 2.7 -1.6 41.5 37.5 41.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-1113   LYS-1114  9.1 8.7 2.7 -1.6 41.5 37.5 41.2
 LEU-1113   LYS-1114  9.1 8.7 2.7 -1.6 41.5 37.5 41.2
 LYS-1114   SER-1115  10.6 10.4 4.6 -3.0 48.4 50.4 86.5
 SER-1115   LEU-1116  13.3 13.1 4.1 -6.8 95.1 93.7 83.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-1125   LEU-1126  15.8 15.9 -7.0 21.8 139.7 142.7 413.0
 LEU-1126   SER-1127  12.8 12.9 1.1 -13.0 74.8 73.1 -238.3
 SER-1127   ASP-1128  10.9 11.0 13.4 0.6 104.4 89.6 87.7
 ASP-1128   LEU-1129  7.2 7.2 17.6 -52.1 56.9 49.6 -773.1
 LEU-1129   PRO-1130  6.2 6.3 27.2 9.5 37.8 44.2 896.5
 PRO-1130   PRO-1131  5.1 4.9 17.6 -36.9 111.6 120.2 289.6
 PRO-1131   LEU-1132  2.6 2.4 17.8 -0.5 93.7 96.6 -412.5
 LEU-1132   LEU-1133  6.3 6.1 4.3 -10.2 120.6 118.3 227.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-1138   SER-1139  16.7 16.6 10.4 -14.6 36.8 35.2 -104.7
 SER-1139   ASN-1140  19.1 19.0 1.5 1.7 102.7 102.4 185.1
 ASN-1140   ASN-1141  22.1 22.1 0.3 -1.5 125.9 128.5 -20.4
 ASN-1141   GLN-1142  20.9 20.9 -7.3 4.3 44.2 41.7 106.1
 ASN-1141   GLN-1142  20.9 20.9 -7.3 4.3 44.2 41.7 106.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-1141   GLN-1142  20.9 20.9 -7.3 4.3 44.2 41.7 106.1
 ASN-1141   GLN-1142  20.9 20.9 -7.3 4.3 44.2 41.7 106.1
 GLN-1142   LEU-1143  20.7 20.9 10.1 -4.0 94.6 96.6 -36.9
 LEU-1143   GLU-1144  17.1 17.3 12.5 -21.8 154.2 152.2 392.8
 GLU-1144   LYS-1145  16.8 16.6 7.4 0.1 103.0 93.4 -300.1
 LYS-1145   LEU-1146  13.2 13.1 -12.5 0.4 142.7 145.8 -237.7
 LEU-1146   PRO-1147  10.4 10.3 12.2 2.5 70.9 75.3 -6.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-1149   GLN-1150  3.7 3.5 -8.0 -15.9 85.0 88.7 -105.0
 GLN-1150   ASN-1151  1.9 1.6 26.0 2.2 37.8 39.3 707.1
 ASN-1151   SER-1152  2.0 1.4 -23.2 -9.7 137.6 138.3 -828.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-1159   VAL-1160  15.6 15.3 9.9 -6.9 89.9 86.0 -148.3
 VAL-1160   ASP-1161  15.3 15.3 13.6 2.6 45.3 43.2 300.0
 ASP-1161   ASN-1162  18.2 18.3 -7.8 7.3 79.2 83.5 -134.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-1163   SER-1164  19.0 18.9 11.3 -15.6 140.6 142.1 46.8
 SER-1164   LEU-1165  18.7 18.5 9.4 -12.7 102.2 101.7 189.1
 LEU-1165   LYS-1166  14.9 14.9 -0.5 10.5 11.5 10.5 -132.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-1170   LEU-1171  2.3 1.9 3.7 -14.0 137.7 143.9 132.3
 LEU-1171   PRO-1172  4.8 4.3 -1.3 -2.1 60.0 59.2 -30.8
 PRO-1172   PRO-1173  5.5 5.2 8.1 -18.3 72.9 72.5 -25.1
 PRO-1173   SER-1174  8.6 8.6 12.3 -5.6 120.7 120.4 -71.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-1180   GLY-1181  14.9 14.8 7.9 0.5 44.9 44.7 143.1
 GLY-1181   ASN-1182  18.0 17.8 -4.6 2.8 77.9 81.3 -132.5
 ASN-1182   ASN-1183  20.2 19.8 -7.6 11.3 68.3 66.9 -165.0
 ASN-1183   GLN-1184  17.8 17.5 7.3 -2.8 29.8 29.4 108.1
 GLN-1184   LEU-1185  16.9 16.8 11.8 -5.6 72.4 68.9 -55.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees