Nuclear Factor-Kappa-B P52

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-221   SER-222  10.3 10.0 17.5 -15.3 111.2 111.9 90.8
 SER-222   PRO-223  7.2 7.1 -7.5 8.5 59.4 63.2 46.1
 PRO-223   GLY-224  8.5 8.8 1.3 -19.1 166.2 162.1 192.8

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Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees