Vitamin B12 Transporter Btub

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-393   LYS-394  5.0 5.6 -39.3 -4.0 46.2 39.1 120.6
 LYS-394   ALA-395  3.8 3.9 -10.6 -8.5 33.1 39.6 50.5
 ALA-395   PRO-396  4.5 3.9 3.0 -2.4 124.3 122.1 12.7
 PRO-396   ASN-397  1.9 1.0 4.0 29.0 50.0 49.4 86.7
 PRO-396   ASN-397  1.9 1.0 4.0 29.0 50.0 49.4 86.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-396   ASN-397  1.9 1.0 4.0 29.0 50.0 49.4 86.7
 PRO-396   ASN-397  1.9 1.0 4.0 29.0 50.0 49.4 86.7
 ASN-397   LEU-398  2.7 3.2 -19.4 -24.0 162.2 145.9 -101.4
 LEU-398   GLY-399  2.8 2.6 28.8 9.2 73.2 57.8 52.6
 GLY-399   GLN-400  3.4 2.7 -7.0 0.4 69.8 69.4 8.9
 GLN-400   LEU-401  2.9 2.8 8.3 2.5 64.6 77.0 -6.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-411   PRO-412  7.4 6.8 -15.7 1.8 64.0 65.5 7.1
 PRO-412   GLU-413  5.0 4.4 -5.5 -3.5 45.9 31.0 35.1
 GLU-413   LYS-414  2.6 2.4 -6.7 -1.7 37.4 48.5 64.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-441   ASP-442  5.8 5.9 -23.3 5.9 16.3 13.4 99.4
 ASP-442   LEU-443  6.7 6.8 1.5 20.0 121.4 110.8 -45.5
 LEU-443   ILE-444  5.4 6.0 -10.9 -7.8 20.8 21.3 76.5
 ILE-444   ASP-445  5.5 6.0 15.8 -5.3 104.1 95.3 18.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-454   ASN-455  9.3 9.2 4.5 -9.8 154.7 159.8 15.3
 ASN-455   GLU-456  8.3 8.7 6.9 47.8 122.3 119.9 -139.9
 GLU-456   GLY-457  10.4 11.0 58.1 168.3 141.0 162.8 488.7
 GLY-457   LYS-458  9.6 10.8 62.8 11.8 146.4 124.1 -243.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees