Vascular Apoptosis-Inducing Protein 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-487   ASN-488  4.9 5.2 7.9 -6.2 5.4 5.8 28.0
 ASN-488   GLY-489  5.7 6.0 -23.9 24.2 109.7 114.9 -19.4
 GLY-489   GLN-490  7.1 7.4 -2.2 -6.7 89.5 94.5 -50.5
 GLN-490   PRO-491  6.0 6.7 17.0 3.9 151.7 147.5 -184.0
 GLN-490   PRO-491  6.0 6.7 17.0 3.9 151.7 147.5 -184.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-490   PRO-491  6.0 6.7 17.0 3.9 151.7 147.5 -184.0
 GLN-490   PRO-491  6.0 6.7 17.0 3.9 151.7 147.5 -184.0
 PRO-491   CYS-492  7.0 7.2 25.1 -23.4 86.9 84.0 32.6
 CYS-492   LYS-493  5.6 5.7 -2.0 -4.0 24.0 26.3 47.6
 LYS-493   ASN-494  6.9 6.9 -23.5 21.1 59.8 55.8 48.9
 ASN-494   ASN-495  9.9 9.6 2.5 3.6 114.9 117.2 -8.8
 ASN-495   ASN-496  8.8 8.5 -17.5 45.3 35.7 46.7 -214.2
 ASN-496   GLY-497  6.0 5.4 -32.7 -7.1 109.3 103.6 -121.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-498   CYS-499  4.1 4.4 4.7 6.8 58.3 59.3 110.1
 CYS-499   TYR-500  1.8 2.0 -13.0 16.7 93.8 97.8 20.9
 TYR-500   ASN-501  4.3 4.2 8.2 -10.8 59.4 54.9 -19.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-502   LYS-503  4.0 3.5 -0.9 2.6 147.6 149.5 14.4
 LYS-503   CYS-504  3.9 3.7 -4.3 4.8 123.1 125.6 7.8
 CYS-504   PRO-505  1.7 1.6 -0.1 1.8 157.2 155.1 26.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees