Transcriptional Regulator (Ntrc Family)

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-320   ALA-321  6.2 6.4 -1.7 5.3 12.7 13.9 -34.7
 ALA-321   ASN-322  5.1 5.4 2.5 2.0 122.9 129.7 -86.3
 ASN-322   HIS-323  8.4 8.3 -36.9 29.0 101.3 91.7 107.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-346   LEU-347  11.6 11.6 7.1 -6.7 136.8 144.8 -32.8
 LEU-347   LEU-348  8.5 8.9 -63.1 61.7 21.0 34.3 60.4
 LEU-348   SER-349  10.9 10.9 5.2 -26.3 106.1 112.1 79.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-354   ASN-355  7.4 7.5 17.8 -19.2 66.7 75.4 1.9
 ASN-355   VAL-356  4.3 4.1 -28.9 22.5 58.0 55.2 105.7
 VAL-356   ARG-357  1.2 1.1 -1.4 -9.0 50.1 54.8 108.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees