Lipase (E.C.3.1.1.3)

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 CYS-60   MET-61  2.7 2.6 -5.4 1.7 136.5 136.3 -4.1
 MET-61   GLN-62  4.1 3.8 10.3 -10.8 24.9 27.4 -1.1
 GLN-62   GLN-63  2.7 2.3 -6.1 8.3 137.5 140.4 2.0
 GLN-63   ASN-64  4.3 4.0 7.5 4.5 53.4 53.2 13.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-70   GLU-71  10.8 12.3 172.3 0.0 140.4 63.7 -19.4
 GLU-71   ASN-72  11.8 13.0 139.9 -40.7 142.3 128.9 -94.9
 ASN-72   LEU-73  10.5 11.3 175.1 34.2 82.2 58.5 -17.7
 LEU-73   PRO-74  12.5 11.9 172.8 14.0 91.2 51.9 161.5
 PRO-74   LYS-75  16.2 8.6 -178.7 -28.9 159.4 147.1 -238.4
 LYS-75   ALA-76  18.4 8.7 -10.5 7.0 117.0 126.3 -4.9
 ALA-76   ALA-77  19.6 12.2 7.0 -6.3 69.5 61.8 -4.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-87   GLU-88  5.8 11.5 -66.3 63.9 113.1 141.6 -0.7
 GLU-88   ALA-89  5.4 10.2 164.3 14.4 39.6 41.3 216.0
 ALA-89   VAL-90  3.5 11.9 179.9 3.0 37.8 95.2 -122.9
 VAL-90   SER-91  4.7 11.5 178.8 7.6 57.3 97.9 -98.8
 SER-91   PRO-92  6.2 7.8 -73.5 1.4 147.9 111.0 133.6
 PRO-92   SER-93  5.9 6.1 -19.5 3.5 85.2 79.2 1.9
 SER-93   SER-94  3.2 3.1 -1.4 1.6 126.6 124.2 2.1
 SER-94   GLU-95  4.5 4.2 1.7 1.1 94.2 98.5 0.2
 GLU-95   ASP-96  6.5 6.3 -3.5 2.7 141.3 144.4 -1.9
 ASP-96   CYS-97  5.2 5.0 6.8 -6.9 102.7 101.8 0.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees