Nuclear Factor Nf-Kappa-B P105 Subunit

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-241   ALA-242  12.4 12.1 -32.5 -14.9 85.6 78.7 14.7
 ALA-242   PRO-243  12.7 11.9 -21.8 -2.4 39.8 81.6 20.8
 PRO-243   ASN-244  12.4 9.4 -170.7 -147.8 101.1 141.4 42.1
 ASN-244   ALA-245  9.0 9.7 4.0 -105.6 48.6 37.9 -113.0
 ALA-245   SER-246  7.4 8.1 82.6 59.2 107.4 108.4 -48.1
 SER-246   ASN-247  4.6 6.5 80.7 -4.8 167.8 61.4 -27.9
 ASN-247   LEU-248  4.2 4.4 178.0 -23.2 124.8 114.2 241.4
 LEU-248   LYS-249  0.7 0.7 -8.7 0.2 83.5 86.4 -5.4
 LYS-249   ILE-250  3.9 3.8 20.9 -22.5 137.0 132.9 6.6

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Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees