Ribokinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-12   ILE-13  5.1 5.2 -1.9 3.9 147.2 144.9 -9.0
 ILE-13   ASN-14  4.4 4.3 1.3 0.7 69.7 75.8 -0.9
 ASN-14   ALA-15  1.5 1.1 -0.9 16.0 150.9 148.9 76.8
 ALA-15   ASP-16  2.6 2.5 -4.9 3.8 117.6 117.2 -11.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-37   VAL-38  2.3 3.2 12.1 -0.3 9.1 9.2 35.6
 VAL-38   ALA-39  3.3 3.8 6.6 -6.3 82.8 85.2 5.3
 ALA-39   PHE-40  3.1 3.1 19.2 -4.9 10.3 18.1 91.0
 PHE-40   GLY-41  4.7 4.4 13.7 -20.7 77.0 86.0 -9.6
 GLY-41   GLY-42  4.2 4.0 2.0 9.7 9.4 12.2 83.2
 GLY-42   LYS-43  4.8 4.7 9.3 -7.6 84.6 89.8 -54.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-66   ASP-67  12.7 12.2 -4.3 31.8 145.4 134.8 129.2
 ASP-67   SER-68  12.7 12.0 4.0 -2.8 42.2 45.0 36.9
 SER-68   ILE-69  13.5 12.8 2.6 -8.5 71.8 75.7 -18.0
 ILE-69   GLY-70  9.9 9.4 7.9 -6.6 126.3 136.0 19.2
 GLY-70   GLU-71  9.7 9.5 3.7 -14.8 78.3 87.8 6.5
 GLU-71   SER-72  13.1 13.2 33.8 -45.3 32.7 33.5 -56.7
 SER-72   VAL-73  12.1 12.6 26.6 -11.3 95.3 88.3 -57.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-96   VAL-97  2.6 2.5 6.3 12.1 13.2 15.7 134.1
 VAL-97   ALA-98  3.4 3.8 -7.2 10.2 102.7 104.3 -70.7
 ALA-98   LEU-99  4.3 4.7 17.3 -11.1 32.6 38.3 44.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-113   ALA-114  6.1 6.3 6.8 2.6 61.3 64.6 79.4
 ALA-114   GLY-115  3.6 3.5 -4.4 2.2 95.1 88.3 28.1
 GLY-115   ALA-116  4.5 4.4 -0.5 -10.1 130.7 126.5 -26.2
 ALA-116   ASN-117  4.2 4.0 12.3 -5.3 73.6 81.1 34.5
 ASN-117   ALA-118  1.5 1.6 -0.7 8.8 152.5 158.6 6.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees