Hypothetical Oxidoreductase Yqhd

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-26   PRO-27  5.8 5.6 -7.5 -2.7 60.0 61.3 93.7
 PRO-27   HIS-28  9.0 8.7 -9.6 -0.2 117.6 126.6 -12.3
 HIS-28   ASP-29  11.9 11.8 -4.9 34.0 138.5 119.3 236.0
 ASP-29   ALA-30  14.1 14.0 -27.6 -7.9 130.2 136.5 -336.7
 ALA-30   ARG-31  11.7 11.8 16.1 -13.3 18.6 18.2 122.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-35   TYR-36  3.2 3.4 -3.6 1.2 72.7 72.9 -23.4
 TYR-36   GLY-37  1.8 1.8 0.3 -0.1 144.5 146.8 -28.5
 GLY-37   GLY-38  4.1 4.0 -24.8 1.3 26.8 25.2 321.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-56   MET-57  16.1 15.8 -13.6 23.0 82.3 76.4 4.8
 MET-57   ASP-58  13.5 13.3 -3.6 0.2 150.0 143.8 -80.7
 ASP-58   VAL-59  14.0 13.6 -19.6 11.5 109.2 113.1 -77.2
 VAL-59   LEU-60  10.9 10.5 11.4 -2.7 18.8 20.8 139.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-133   GLY-134  5.9 6.0 3.9 4.1 67.5 64.5 57.1
 GLY-134   CYS-135  2.8 2.9 2.9 -8.5 150.6 150.0 63.0
 CYS-135   VAL-136  3.3 3.4 -0.6 3.3 92.2 91.5 24.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-137   THR-138  8.2 8.3 -4.5 13.1 128.6 124.2 172.2
 THR-138   LEU-139  9.6 10.0 6.6 -34.5 63.5 71.7 -162.2
 LEU-139   PRO-140  12.1 12.7 -51.4 -27.4 38.6 41.9 896.0
 PRO-140   ALA-141  15.1 15.0 -26.4 -99.1 62.2 113.5 -471.5
 ALA-141   THR-142  14.6 17.0 159.5 30.2 73.9 123.0 -736.1
 THR-142   GLY-143  15.9 16.2 -14.9 -37.8 39.7 9.1 611.1
 GLY-143   SER-144  15.4 15.0 37.6 -3.7 92.6 96.2 -61.9
 SER-144   GLU-145  12.9 12.7 4.8 10.0 125.8 123.9 -138.4
 GLU-145   SER-146  10.0 9.8 -8.7 -15.8 14.3 18.2 354.8
 SER-146   ASN-147  11.8 11.3 31.9 -11.1 98.4 95.5 -212.0
 ASN-147   ALA-148  14.1 13.9 0.3 2.8 72.8 71.8 18.2
 ALA-148   GLY-149  14.8 14.9 -8.7 17.4 141.5 144.9 98.7
 GLY-149   ALA-150  16.6 16.7 -12.1 12.1 150.2 146.0 -113.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-174   LEU-175  9.3 9.4 -3.4 -0.2 69.9 70.9 52.8
 VAL-174   LEU-175  9.3 9.4 -3.4 -0.2 69.9 70.9 52.8
 VAL-171   PHE-172  5.0 5.1 1.9 1.6 84.1 85.3 -1.8
 PHE-172   ALA-173  3.8 3.8 -1.1 -3.5 26.7 27.5 73.1
 ALA-173   VAL-174  5.8 5.8 -3.2 3.7 95.5 91.8 -4.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees