Photosystem II D1 Protease

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-145   PRO-146  17.4 17.4 -10.5 10.0 83.4 79.3 22.5
 PRO-146   SER-147  19.6 19.7 -7.7 -11.4 134.0 131.8 -105.9
 SER-147   ARG-148  19.1 19.8 6.0 4.6 92.0 79.3 -43.8
 ARG-148   LEU-149  15.5 16.2 0.5 8.2 148.6 143.2 -104.1
 LEU-149   ALA-150  16.1 16.0 -61.3 56.2 92.4 94.6 200.8
 ALA-150   ALA-151  18.8 19.1 10.4 -11.1 55.3 46.4 51.1
 ALA-151   LEU-152  17.1 18.0 -13.2 51.5 67.9 74.1 -32.9
 LEU-152   ARG-153  14.5 14.9 -41.0 0.0 40.1 62.3 396.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-398   LEU-399  7.4 7.6 -4.7 10.4 111.2 112.1 56.7
 LEU-399   ILE-400  3.6 3.8 11.9 -8.4 94.0 89.9 -12.0
 ILE-400   GLN-401  3.3 3.6 3.4 -4.3 94.7 99.7 40.2
 GLN-401   THR-402  3.9 4.1 -26.9 21.1 106.7 106.5 -5.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-414   THR-415  6.4 6.4 -1.5 5.4 74.2 71.8 9.9
 THR-415   VAL-416  2.7 2.8 4.8 -10.4 173.9 171.5 39.1
 VAL-416   ALA-417  2.9 2.7 -1.9 -4.8 55.9 56.5 -27.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees