Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 THR-107   LEU-108  8.0 7.6 7.6 0.1 110.5 114.0 -9.7
 LEU-108   GLY-109  4.5 4.0 -10.7 19.6 138.1 137.7 19.5
 GLY-109   ILE-110  1.9 1.7 -46.2 28.5 62.9 68.2 34.6
 ILE-110   SER-111  3.5 3.2 -0.9 -8.9 58.6 64.9 32.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLY-208   GLY-209  11.6 11.6 23.7 -32.7 98.9 91.7 -17.3
 GLY-209   LEU-210  10.3 9.4 10.0 13.3 105.6 116.5 -18.4
 LEU-210   ILE-211  7.0 6.3 11.4 8.2 157.8 154.1 -84.2
 ILE-211   ASP-212  6.1 6.4 -174.1 143.3 69.1 44.7 39.3
 ASP-212   SER-213  3.2 3.7 130.8 -96.3 71.2 61.2 73.5
 SER-213   LYS-214  4.5 4.1 -4.6 10.7 77.5 74.5 21.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 TRP-251   ARG-252  5.2 5.5 -9.4 -4.9 33.4 38.7 34.6
 ARG-252   GLY-253  5.1 5.3 -1.3 -17.5 55.7 46.7 44.0
 GLY-253   ASN-254  2.1 2.3 -10.5 28.1 23.3 26.4 -78.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees