Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 THR-107   LEU-108  7.8 7.4 1.0 7.0 110.1 112.6 7.5
 LEU-108   GLY-109  4.3 3.7 -14.4 23.8 138.3 138.4 24.8
 GLY-109   ILE-110  1.7 1.5 -43.1 27.5 62.6 67.1 25.2
 ILE-110   SER-111  3.6 3.3 -0.5 -7.9 60.1 67.0 34.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLY-208   GLY-209  11.7 11.7 25.3 -32.3 98.5 90.6 -21.7
 GLY-209   LEU-210  10.3 9.4 9.5 8.4 104.1 114.6 -27.2
 LEU-210   ILE-211  6.9 6.2 2.3 18.2 157.5 159.4 -74.1
 ILE-211   ASP-212  6.0 6.3 -178.7 150.7 70.4 45.7 30.0
 ASP-212   SER-213  3.1 3.5 133.7 -100.6 70.8 61.6 73.1
 SER-213   LYS-214  4.2 3.9 -13.5 12.7 79.0 75.3 33.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 TRP-251   ARG-252  5.0 5.3 -8.6 -2.4 34.6 37.9 29.1
 ARG-252   GLY-253  5.0 5.3 -0.5 -20.5 54.6 48.7 48.6
 GLY-253   ASN-254  1.9 2.2 -15.5 32.5 24.0 30.8 -82.0
 ASN-254   GLY-255  2.3 2.2 -39.1 -14.9 73.0 88.3 61.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees