Transportin-1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ASP-550   SER-551  5.6 6.0 -2.4 -5.2 97.7 97.4 -31.7
 SER-551   VAL-552  8.6 8.8 12.3 -10.5 56.9 61.6 54.0
 VAL-552   GLY-553  8.3 8.4 -14.8 9.6 154.4 154.6 -63.0
 GLY-553   HIS-554  5.9 5.8 -1.7 -4.3 108.5 108.4 10.6
 HIS-554   HIS-555  6.2 6.0 -2.4 13.2 62.6 67.2 -15.6
 HIS-555   LEU-556  9.2 9.2 -20.6 13.1 50.4 55.1 69.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 VAL-593   ALA-594  1.9 1.8 -9.8 6.0 20.5 16.0 19.5
 ALA-594   THR-595  3.9 3.9 2.8 -10.3 136.5 136.5 54.8
 THR-595   ALA-596  1.8 2.4 10.2 -20.0 91.1 92.2 78.3
 ALA-596   LEU-597  1.8 1.7 -8.6 19.3 62.0 68.2 -117.3
 LEU-597   GLN-598  4.0 3.4 31.7 -40.6 150.5 142.4 101.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 SER-599   GLY-600  6.6 5.6 -4.7 4.4 48.1 49.7 9.9
 GLY-600   PHE-601  8.5 7.5 4.1 -1.7 117.7 119.4 1.7
 PHE-601   LEU-602  8.2 7.6 -13.7 13.3 120.4 114.0 112.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees