Chimera Protein Of C-C Chemokine Receptor Type 5 And Rubredoxin

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-222   ARG-223  2.1 1.8 1.9 17.3 42.9 39.1 109.9
 ARG-223   MET-1001  1.0 1.0 -31.0 40.9 157.0 144.5 32.0
 MET-1001   LYS-1002  2.1 2.2 -9.4 -5.6 99.2 102.5 -72.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-1052   GLU-1053  11.1 11.0 -6.0 3.1 121.5 121.7 8.7
 GLU-1053   GLU-1054  12.6 12.9 1.6 -61.1 112.1 115.7 129.9
 GLU-1054   GLU-227  11.2 11.6 20.7 12.9 136.7 86.6 4.6
 GLU-227   LYS-228  12.2 14.1 129.1 -14.9 87.7 63.7 170.9
 LYS-228   LYS-229  12.0 13.3 -46.8 -52.3 131.2 88.4 -194.6
 LYS-229   ARG-230  15.6 16.1 21.9 -3.8 39.7 97.3 98.9
 ARG-230   HIS-231  14.6 14.3 -9.3 -9.8 136.7 160.6 -126.3
 HIS-231   ARG-232  11.7 13.2 51.2 -9.8 61.0 54.1 200.6
 ARG-232   ASP-233  14.4 16.7 5.5 -3.6 48.9 61.5 35.7
 ASP-233   VAL-234  16.7 17.6 -23.7 -8.8 155.7 148.4 -179.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees