Sn-Glycerol-3-Phosphate-Binding Periplasmic Protein Ugpb
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
VAL-98
PRO-99
8.8
8.7
8.4
12.3
10.2
12.6
95.9
PRO-99
THR-100
10.6
10.7
-8.6
25.5
132.7
133.1
34.1
THR-100
VAL-101
8.3
8.2
-42.9
15.3
83.7
106.4
-53.7
VAL-101
SER-102
5.2
5.6
8.4
8.0
59.1
64.5
9.8
SER-102
GLY-103
7.5
8.8
-16.8
4.6
158.3
160.7
-37.7
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
PRO-117
PHE-118
5.6
6.7
7.7
-34.4
141.7
141.2
85.7
PHE-118
ASN-119
6.3
6.4
16.8
-14.3
118.0
106.5
2.5
ASN-119
SER-120
5.0
4.7
-5.4
5.6
124.7
129.4
21.6
SER-120
SER-121
1.9
1.8
3.3
5.6
113.0
116.3
-5.1
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ILE-281
ILE-282
6.7
7.3
-10.1
20.3
110.6
113.5
36.6
ILE-282
GLY-283
3.5
4.2
-1.6
-1.0
52.8
60.4
1.2
GLY-283
GLY-284
3.7
4.6
6.0
3.3
56.5
58.5
11.3
GLY-284
ALA-285
5.0
5.3
-4.9
-3.5
56.2
52.4
13.0
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
TYR-340
GLU-341
7.7
8.1
-11.1
12.8
49.7
49.3
-15.8
GLU-341
LYS-342
9.6
10.0
-14.1
12.2
86.6
77.0
17.4
LYS-342
ASN-343
9.2
9.4
-16.6
6.1
152.4
141.3
-41.1
ASN-343
PRO-344
9.7
10.1
11.8
9.5
62.0
47.3
68.7
PRO-344
GLY-345
12.2
12.5
178.1
-173.1
7.6
5.9
18.1
GLY-345
ALA-346
12.1
12.5
13.0
-2.9
63.9
66.7
-2.3
ALA-346
ASP-347
8.4
8.8
-3.7
-12.4
107.4
125.4
-46.1
ASP-347
THR-348
8.5
8.4
30.0
0.9
35.6
36.1
102.5
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees