Glycosyl Transferase, Group 1 Family Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-305   TYR-306  6.9 6.6 -28.0 -9.5 56.0 43.0 220.6
 TYR-306   SER-307  5.1 5.2 -2.6 -6.8 66.7 55.5 85.4
 SER-307   GLU-308  5.8 6.0 8.5 -5.4 174.2 160.9 18.1
 GLU-308   THR-309  7.2 6.8 45.4 -25.4 105.0 106.0 59.3
 THR-309   ILE-310  7.6 8.0 8.8 -2.3 111.0 100.4 -36.3
 ILE-310   ASP-311  11.3 11.8 2.8 0.2 153.3 154.3 -45.2
 ASP-311   THR-312  13.0 13.8 11.3 -29.4 82.8 81.1 -82.5
 THR-312   PRO-313  16.5 17.1 10.0 -17.1 85.7 81.0 -17.4
 PRO-313   VAL-314  19.0 18.7 16.0 -3.3 19.0 28.6 97.3
 VAL-314   GLN-315  18.2 17.9 -8.9 0.5 103.4 95.9 -11.5
 GLN-315   THR-316  20.7 20.5 1.8 -8.0 123.1 129.6 37.9
 THR-316   LEU-317  23.8 23.5 -3.0 -4.2 137.0 135.1 -36.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-407   PHE-408  6.7 6.0 154.9 -104.2 19.3 36.3 322.0
 PHE-408   SER-409  5.5 5.2 177.1 -164.2 62.6 73.5 -123.0
 SER-409   LEU-410  8.6 8.7 -17.1 1.3 176.8 175.2 -99.0
 LEU-410   ALA-411  9.2 9.6 -5.4 -1.3 107.7 110.9 -33.0
 ALA-411   LEU-412  12.3 12.4 13.7 2.3 97.4 97.3 -19.9
 ALA-411   LEU-412  12.3 12.4 13.7 2.3 97.4 97.3 -19.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-411   LEU-412  12.3 12.4 13.7 2.3 97.4 97.3 -19.9
 ALA-411   LEU-412  12.3 12.4 13.7 2.3 97.4 97.3 -19.9
 LEU-412   LEU-413  10.9 10.6 -10.2 -11.2 35.8 27.2 129.1
 LEU-413   GLU-414  8.3 8.3 8.5 3.1 143.7 139.6 -59.8
 GLU-414   SER-415  11.0 11.0 2.3 6.8 94.1 101.2 -36.0
 SER-415   LEU-416  13.5 13.3 -20.2 9.8 74.7 58.6 19.4
 LEU-416   ALA-417  11.5 11.4 -7.5 0.4 11.1 15.4 38.8
 ALA-417   HIS-418  10.3 10.0 -0.6 0.2 60.2 55.2 -7.5
 HIS-418   GLY-419  14.0 13.7 8.2 -15.5 80.9 89.2 16.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-477   GLN-478  6.6 6.5 10.6 -1.8 48.8 53.7 22.1
 GLN-478   GLN-479  5.0 4.8 -13.5 3.4 68.9 60.7 2.7
 GLN-479   TYR-480  4.2 4.1 6.2 -8.6 104.4 112.2 11.2
 TYR-480   SER-481  1.0 1.2 -2.4 -4.1 141.1 143.1 -21.9
 SER-481   LYS-482  1.1 1.2 8.3 -7.8 94.0 92.6 18.3
 LYS-482   ALA-483  4.3 4.2 2.7 3.7 80.6 79.2 -15.9
 ALA-483   SER-484  4.5 4.3 -7.3 10.4 40.2 37.0 -49.2
 SER-484   LEU-485  4.5 4.1 -5.4 -4.9 49.8 51.1 63.8
 LEU-485   ILE-486  5.6 5.5 2.0 0.4 71.2 68.3 -8.3
 ILE-486   LYS-487  8.6 8.5 9.8 -6.7 99.2 98.1 27.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees