Tata-Binding Protein (Tbp, C-Terminal 179 Amino Acids)

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-68   ASN-69  1.5 1.5 0.4 11.6 88.9 87.5 31.1
 ASN-69   ILE-70  2.1 2.5 0.7 -5.9 27.5 32.3 -59.6
 ILE-70   VAL-71  4.5 4.6 5.4 -8.0 90.9 86.0 41.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-159   ILE-160  4.4 4.6 -10.5 2.0 138.8 139.6 -59.1
 ILE-160   VAL-161  1.4 1.4 4.0 1.9 82.0 82.3 37.6
 VAL-161   GLY-162  2.3 2.5 -2.8 -11.3 124.7 119.5 -76.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees