D-Lactate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-98   VAL-99  9.9 9.8 -0.1 -2.3 106.9 105.9 56.8
 VAL-99   PRO-100  8.3 8.2 -7.6 -5.3 121.3 123.7 -113.0
 PRO-100   VAL-101  11.5 11.4 13.9 7.2 41.7 53.2 221.6
 VAL-101   TYR-102  10.7 10.5 11.2 -22.3 76.2 71.9 -71.1
 TYR-102   SER-103  7.7 7.8 13.7 -13.9 47.2 47.0 60.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-308   MET-309  3.3 3.0 -8.2 9.2 108.8 108.9 63.4
 MET-309   VAL-310  3.4 3.3 4.0 -2.3 56.7 58.6 -33.2
 VAL-310   VAL-311  2.3 2.3 13.9 -18.6 29.4 28.3 -67.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees