Thioredoxin Reductase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-111   THR-112  6.4 6.4 -5.5 13.2 124.6 124.8 6.4
 THR-112   GLY-113  3.2 3.2 -4.8 -20.8 171.2 164.7 -33.0
 GLY-113   ALA-114  4.8 5.0 42.1 -4.5 47.5 47.3 44.7
 ALA-114   SER-115  4.1 2.9 72.6 -41.0 44.3 65.7 26.6
 SER-115   ALA-116  2.8 1.3 14.3 20.8 12.2 6.0 51.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-244   HIS-245  4.2 4.5 30.0 -23.7 36.9 40.4 8.1
 HIS-245   SER-246  3.6 3.1 20.5 -16.6 56.4 69.0 -0.7
 SER-246   PRO-247  3.1 4.3 33.2 7.8 21.5 10.5 69.2
 PRO-247   ASN-248  4.6 5.0 10.1 -0.6 53.8 61.9 -3.0
 ASN-248   THR-249  3.0 3.1 4.8 16.5 42.7 42.6 25.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees