Type II DNA Topoisomerase Vi Subunit B
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
PHE-25
PRO-26
8.0
8.3
5.9
-10.4
33.1
32.3
-16.5
PRO-26
ASN-27
9.1
9.2
-1.2
10.5
148.5
144.8
36.6
ASN-27
PRO-28
6.3
6.0
-3.5
4.4
73.1
73.0
-2.7
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
GLY-91
ARG-92
19.6
20.0
0.9
11.7
76.1
78.2
20.6
ARG-92
VAL-93
20.6
21.0
1.7
7.6
73.6
79.7
-24.9
VAL-93
LEU-94
18.8
19.1
6.2
139.7
48.3
34.4
674.2
LEU-94
TYR-95
19.8
18.8
-99.5
-63.0
70.3
134.9
-449.5
TYR-95
SER-96
22.3
18.8
152.5
-15.9
69.8
67.9
-545.0
SER-96
SER-97
20.3
16.0
-14.0
-25.5
113.1
164.7
-202.6
SER-97
LYS-98
17.1
15.1
-108.0
-49.6
164.3
114.7
999.1
LYS-98
TYR-99
17.2
12.6
-135.2
-21.3
118.7
96.5
-247.7
TYR-99
VAL-100
16.7
15.5
-125.6
-10.2
106.2
163.8
-676.5
VAL-100
ASN-101
13.0
14.6
40.9
51.4
13.0
80.1
414.1
ASN-101
ARG-102
11.8
13.0
78.1
-10.2
79.7
74.5
41.0
ARG-102
GLN-103
8.1
9.3
3.2
-10.7
147.0
141.8
35.0
GLN-103
THR-104
5.8
6.5
-14.4
-3.3
55.7
57.4
49.2
THR-104
ARG-105
4.9
5.8
2.3
8.4
145.5
151.7
-34.2
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
TYR-108
GLY-109
9.7
13.6
-158.2
128.6
59.8
99.3
-28.5
GLY-109
LEU-110
12.6
14.5
66.4
-42.3
70.2
9.4
94.0
LEU-110
GLY-111
12.8
13.8
-22.8
-87.7
78.4
112.7
-157.1
GLY-111
VAL-112
9.6
10.3
62.9
-2.7
43.1
50.3
194.2
VAL-112
LYS-113
10.0
11.3
-12.2
3.7
127.2
130.6
-20.8
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
HIS-232
PRO-233
17.8
17.5
4.5
-10.5
105.6
104.0
13.4
PRO-233
TYR-234
21.7
21.3
1.1
12.0
134.4
130.0
-35.0
TYR-234
GLY-235
22.4
22.1
121.9
-170.8
156.7
164.2
258.6
GLY-235
VAL-236
20.4
23.2
14.5
41.0
113.6
103.3
-147.2
VAL-236
ASP-237
22.5
23.2
3.1
0.6
105.5
112.1
-94.1
ASP-237
ARG-238
25.7
26.1
-6.0
-1.0
98.7
107.2
5.4
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASP-305
PHE-306
24.3
24.2
-0.3
6.9
83.0
86.8
-15.2
PHE-306
ARG-307
21.2
21.2
-9.8
-4.4
91.6
96.5
15.1
ARG-307
SER-308
17.8
17.8
-6.4
4.3
11.2
26.1
8.0
SER-308
PRO-309
16.8
15.7
4.2
-19.5
108.2
89.2
43.2
PRO-309
SER-310
14.7
13.2
32.3
-11.8
74.4
74.9
22.5
SER-310
ALA-311
11.1
9.5
26.6
-6.4
139.6
152.2
-86.7
ALA-311
ASP-312
8.7
7.1
4.0
-8.4
89.0
100.0
27.3
ASP-312
SER-313
5.8
4.9
3.0
-4.4
150.9
147.5
42.0
SER-313
LEU-314
6.6
6.7
2.4
-13.9
135.8
139.1
47.5
LEU-314
SER-315
5.2
5.1
-11.3
11.9
97.8
91.9
19.8
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LYS-343
ALA-344
15.9
16.0
-11.2
26.4
102.5
108.5
3.9
ALA-344
TYR-345
16.7
17.0
-0.7
6.2
126.1
139.3
17.5
TYR-345
GLN-346
19.0
18.8
-13.9
0.9
104.3
102.5
-18.0
GLN-346
GLY-347
20.6
20.4
2.3
2.4
113.6
121.5
-24.3
GLY-347
HIS-348
18.6
18.8
-21.2
31.2
98.8
92.8
21.6
HIS-348
PRO-349
15.1
15.2
-15.1
11.3
74.2
67.8
27.4
PRO-349
PHE-350
12.9
12.9
-9.3
-5.6
143.5
140.7
-60.3
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASN-375
LYS-376
5.3
5.1
-0.8
-8.1
110.6
107.8
18.8
LYS-376
ILE-377
4.4
4.0
0.3
16.0
17.8
14.9
69.2
ILE-377
PRO-378
4.0
3.7
-12.3
-2.9
116.7
115.4
-35.1
PRO-378
LEU-379
7.0
6.5
-17.6
7.1
51.1
42.0
45.3
PRO-378
LEU-379
7.0
6.5
-17.6
7.1
51.1
42.0
45.3
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
PRO-378
LEU-379
7.0
6.5
-17.6
7.1
51.1
42.0
45.3
PRO-378
LEU-379
7.0
6.5
-17.6
7.1
51.1
42.0
45.3
LEU-379
ILE-380
8.5
8.0
8.6
-14.2
141.8
139.5
60.3
ILE-380
TYR-381
8.9
8.6
13.3
-6.9
134.1
137.7
-44.1
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees