Pyruvate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-88   ILE-89  4.8 3.8 -13.8 20.7 71.4 66.9 14.3
 ILE-89   ARG-90  1.3 0.1 22.9 -24.0 71.5 76.9 -10.5
 ARG-90   THR-91  4.4 3.9 -12.5 7.0 79.2 74.6 33.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-125   ILE-126  9.9 9.8 21.8 -21.8 121.1 114.7 1.3
 ILE-126   ASP-127  6.4 6.3 6.7 25.1 39.1 39.3 92.8
 ASP-127   TYR-128  3.6 3.1 -56.2 34.6 93.1 103.7 -27.4
 TYR-128   GLN-129  3.6 4.5 -7.3 -5.9 64.3 59.0 66.2
 TYR-128   GLN-129  3.6 4.5 -7.3 -5.9 64.3 59.0 66.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-128   GLN-129  3.6 4.5 -7.3 -5.9 64.3 59.0 66.2
 TYR-128   GLN-129  3.6 4.5 -7.3 -5.9 64.3 59.0 66.2
 GLN-129   ASN-130  6.2 6.8 -1.0 1.5 109.2 101.0 12.9
 ASN-130   LEU-131  8.9 9.3 -13.4 4.6 161.6 165.4 -31.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-174   ARG-175  9.8 9.7 15.3 -53.0 152.0 143.6 112.7
 ARG-175   GLY-176  8.3 7.9 20.5 0.6 79.8 86.6 -16.8
 GLY-176   VAL-177  5.2 4.4 1.5 2.6 111.8 109.6 -19.7
 VAL-177   ASN-178  2.3 2.5 -55.2 46.6 76.7 70.2 15.0
 ASN-178   LEU-179  1.1 1.3 -13.0 5.2 76.9 74.9 27.9
 LEU-179   PRO-180  4.9 5.1 -7.3 6.1 64.1 62.9 -1.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees