Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-108   LEU-109  4.8 4.8 5.5 -2.6 45.0 40.9 5.5
 LEU-109   GLY-110  1.5 1.5 -14.7 -15.2 68.5 66.3 51.6
 GLY-110   ILE-111  2.2 2.4 9.2 10.6 36.8 41.4 48.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-192   THR-193  1.9 2.6 2.1 1.5 116.8 121.0 -34.5
 THR-193   THR-194  2.6 2.8 -12.3 7.8 12.1 10.7 24.7
 THR-194   ILE-195  1.4 1.0 -2.2 -1.0 65.1 66.4 20.8
 ILE-195   GLU-196  2.6 3.3 -13.4 -9.3 102.1 102.5 -44.8
 ILE-195   GLU-196  2.6 3.3 -13.4 -9.3 102.1 102.5 -44.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-195   GLU-196  2.6 3.3 -13.4 -9.3 102.1 102.5 -44.8
 ILE-195   GLU-196  2.6 3.3 -13.4 -9.3 102.1 102.5 -44.8
 GLU-196   PHE-197  4.9 5.8 23.3 -6.9 30.0 45.6 48.0
 PHE-197   VAL-198  4.6 5.2 -4.2 3.8 144.4 153.6 5.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-212   ASP-213  8.4 8.2 5.1 -1.0 39.3 43.1 10.4
 ASP-213   SER-214  5.9 5.5 -1.2 3.3 89.4 88.1 12.6
 SER-214   LYS-215  2.3 1.8 -0.3 15.6 94.3 88.8 23.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees