DNA Polymerase IV (Family Y)
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
VAL-32
PHE-33
10.8
10.8
-5.2
7.5
140.6
144.6
63.9
PHE-33
SER-34
12.2
12.1
17.1
-25.2
51.1
52.3
42.3
SER-34
GLY-35
9.7
9.7
12.7
-6.9
10.1
7.2
27.8
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
SER-40
GLY-41
14.9
14.5
3.3
-7.9
53.6
52.9
-117.3
GLY-41
ALA-42
12.5
12.0
15.2
-7.3
16.5
18.7
164.2
ALA-42
VAL-43
12.2
11.7
-0.3
-2.8
123.8
122.7
-39.7
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
GLU-100
ILE-101
12.3
12.3
7.1
-1.2
58.3
61.1
31.4
ILE-101
ALA-102
11.2
11.2
4.8
-10.6
62.6
64.3
-49.1
ALA-102
SER-103
7.7
7.6
2.8
8.2
32.4
35.4
126.3
SER-103
ILE-104
7.1
6.9
7.9
-0.3
85.3
76.5
-35.5
ILE-104
ASP-105
9.4
9.3
15.1
-18.5
140.7
137.5
-51.5
ASP-105
GLU-106
9.5
9.9
-7.2
9.9
155.8
160.7
74.9
ASP-105
GLU-106
9.5
9.9
-7.2
9.9
155.8
160.7
74.9
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASP-105
GLU-106
9.5
9.9
-7.2
9.9
155.8
160.7
74.9
ASP-105
GLU-106
9.5
9.9
-7.2
9.9
155.8
160.7
74.9
GLU-106
ALA-107
8.0
8.5
12.2
1.9
76.8
78.7
-110.6
ALA-107
TYR-108
9.8
10.2
-1.9
12.7
165.3
158.5
95.8
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ARG-238
THR-239
15.1
15.2
11.7
-13.0
40.6
41.9
-149.1
THR-239
ARG-240
16.3
16.2
4.4
16.8
36.1
41.4
359.1
ARG-240
VAL-241
14.2
13.9
-2.4
2.5
149.2
148.8
-114.9
VAL-241
ARG-242
15.6
15.6
-11.3
-1.8
134.3
135.0
-65.3
ARG-242
LYS-243
13.4
13.5
-10.1
2.0
117.5
121.0
-53.3
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees