Argonaute

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 CYS-175   GLU-176  3.7 3.6 -34.4 25.0 131.8 134.2 -23.9
 GLU-176   MET-177  5.6 5.7 21.0 21.0 27.7 35.7 110.6
 MET-177   SER-178  2.8 2.5 -3.6 -38.7 85.7 88.3 -1.8
 SER-178   LEU-179  2.3 3.4 -25.4 41.2 75.2 92.4 -19.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-263   VAL-264  3.6 3.8 2.7 5.2 31.4 30.9 41.9
 VAL-264   LEU-265  3.2 3.4 6.6 2.9 69.5 73.3 11.6
 LEU-265   THR-266  2.3 1.5 17.1 -8.8 12.1 11.6 30.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees