Ionotropic Glutamate Receptor 5

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-107   LEU-108  5.8 6.1 7.3 -6.7 103.1 101.6 2.2
 LEU-108   GLY-109  2.6 2.9 20.5 -6.4 41.1 35.8 57.9
 GLY-109   ILE-110  2.8 3.5 6.2 -9.8 111.4 112.0 5.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-211   ASP-212  5.5 5.9 -14.1 15.9 62.0 60.0 11.4
 ASP-212   SER-213  4.1 4.4 2.6 26.5 61.8 63.9 103.6
 SER-213   LYS-214  3.4 3.7 -12.3 18.7 98.7 109.4 81.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees