Jumonji Domain-Containing Protein 2A

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-920   ARG-921  5.6 5.5 11.2 14.1 26.1 33.8 125.9
 ARG-921   LEU-922  5.9 5.1 -15.4 -16.1 135.4 143.7 -113.1
 LEU-922   THR-923  5.4 5.1 7.8 -25.6 53.9 45.9 -58.9
 THR-923   THR-924  2.8 3.2 4.4 -3.7 25.7 36.1 8.1
 THR-924   GLU-925  1.7 1.8 11.0 -18.3 84.0 77.5 -11.7
 GLU-925   THR-926  2.4 2.1 19.1 6.6 17.6 31.5 109.0
 THR-926   PHE-927  3.8 3.7 20.1 -20.9 86.3 96.7 -7.3
 PHE-927   TYR-928  6.9 7.0 11.1 -4.9 16.8 17.1 28.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-978   ALA-979  11.1 10.7 1.9 1.4 83.0 81.7 7.0
 ALA-979   SER-980  7.7 7.4 -8.3 34.5 160.8 158.8 120.1
 SER-980   HIS-981  5.6 5.2 -0.5 16.2 101.1 113.8 46.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees