Glutamate Receptor, Ionotropic Kainate 1
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LEU-87
THR-88
9.1
8.1
-159.9
13.3
79.7
80.1
8.8
THR-88
ILE-89
9.2
5.5
164.1
19.6
41.7
136.5
22.8
ILE-89
THR-90
12.3
7.0
-143.8
76.4
97.3
100.4
11.5
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
PHE-99
SER-100
16.5
20.7
172.9
-0.2
63.5
38.7
-134.9
SER-100
LYS-101
19.2
22.2
159.1
-15.8
46.3
101.6
79.5
LYS-101
PRO-102
20.1
24.7
178.7
-8.5
51.9
124.1
20.2
PRO-102
PHE-103
17.4
25.8
-148.2
-1.7
134.3
125.0
-107.4
PHE-103
MET-104
17.4
27.0
-11.6
55.5
148.0
114.2
11.0
MET-104
THR-105
14.7
29.2
159.1
-15.7
102.0
133.8
-25.0
THR-105
LEU-106
13.8
30.5
-24.3
106.7
113.3
28.2
148.4
LEU-106
GLY-107
10.7
30.5
-52.0
53.8
74.8
63.3
-5.0
GLY-107
ILE-108
10.1
28.0
-37.5
-50.7
89.6
7.1
-127.1
ILE-108
SER-109
8.1
29.1
-12.7
47.1
149.0
73.1
13.5
SER-109
ILE-110
7.8
27.4
-73.3
10.5
88.2
31.3
19.8
ILE-110
LEU-111
7.0
29.8
2.0
44.7
48.2
115.0
-7.9
LEU-111
TYR-112
4.7
28.7
0.3
48.1
76.5
79.5
17.4
TYR-112
ARG-113
7.7
29.8
14.8
-91.1
25.7
138.2
-12.5
ARG-113
LYS-114
8.8
30.2
8.1
1.4
43.4
67.1
7.0
LYS-114
GLY-115
8.2
31.2
171.8
-155.3
68.0
98.6
13.4
GLY-115
THR-116
11.1
34.6
-65.0
35.7
63.0
130.6
-0.8
THR-116
PRO-117
13.7
35.5
-27.7
-12.0
92.3
161.0
-23.1
PRO-117
ILE-118
16.1
36.4
26.2
-3.1
143.5
53.8
-4.0
ILE-118
ASP-119
14.6
34.9
32.1
-2.2
77.9
55.4
5.2
ASP-119
SER-120
13.9
32.4
157.7
91.7
142.0
81.3
45.4
SER-120
ALA-121
14.5
30.0
-54.7
9.4
32.1
152.2
-6.0
ALA-121
ASP-122
14.5
32.0
-1.1
-34.2
85.4
134.8
-25.9
ASP-122
ASP-123
18.2
28.9
81.9
-24.3
68.2
80.6
53.0
ASP-123
LEU-124
18.0
27.6
-25.0
9.4
54.0
166.4
-8.2
LEU-124
ALA-125
16.3
28.4
9.4
0.2
140.9
61.4
1.0
ALA-125
LYS-126
18.5
27.6
-26.8
29.4
101.8
89.8
-0.1
LYS-126
GLN-127
21.6
24.0
-51.0
91.8
107.7
120.3
-93.6
GLN-127
THR-128
21.3
23.6
154.5
64.3
137.5
16.8
77.1
THR-128
LYS-129
20.8
23.8
-25.6
-20.5
116.7
94.5
-44.2
LYS-129
ILE-130
20.8
21.4
31.5
-3.3
95.4
104.0
10.7
ILE-130
GLU-131
16.9
18.9
-120.3
-19.0
19.0
142.4
32.3
GLU-131
TYR-132
15.5
19.2
170.3
55.5
87.3
47.7
-60.1
TYR-132
GLY-133
12.1
18.2
-120.7
90.4
22.4
65.8
15.5
GLY-133
ALA-134
9.6
15.2
-56.5
12.5
95.0
125.4
-3.9
ALA-134
VAL-135
6.0
12.2
-92.2
-46.0
52.2
54.3
103.5
VAL-135
ARG-136
3.9
9.6
3.6
-41.3
162.1
78.9
7.9
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
SER-139
THR-140
5.4
4.5
30.9
165.1
127.0
165.9
95.8
THR-140
MET-141
6.0
3.7
-107.1
-15.0
122.2
83.4
-22.5
MET-141
THR-142
6.6
6.4
174.3
-41.0
50.4
59.9
96.2
THR-142
PHE-143
8.0
9.4
131.1
-77.7
115.0
116.2
-11.1
PHE-143
PHE-144
10.5
12.6
-158.0
-55.0
88.8
96.7
-53.8
PHE-144
LYS-145
11.7
16.0
-153.1
-56.2
153.1
36.6
-4.1
LYS-145
LYS-146
11.9
18.8
-121.2
38.5
113.3
108.7
-73.0
LYS-146
SER-147
13.7
22.6
-62.1
15.1
55.5
150.1
-17.1
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees