Serine/threonine-Protein Kinase Pak 4

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-439   VAL-440  11.5 11.9 -7.9 20.4 70.4 69.0 -4.2
 VAL-440   SER-441  8.9 9.1 -3.1 8.8 98.1 83.5 43.4
 SER-441   PRO-442  10.7 10.6 4.2 -10.7 20.5 23.5 -89.0
 PRO-442   GLY-443  11.9 12.5 -5.9 21.4 89.1 82.0 117.8
 GLY-443   ASP-444  11.8 12.5 -28.0 1.5 81.7 105.8 41.8
 ASP-444   PRO-445  10.7 10.9 0.5 -2.0 144.1 129.6 10.2
 PRO-445   ARG-446  10.7 10.4 6.3 -2.1 86.4 65.4 9.1
 ARG-446   GLU-447  12.7 11.8 -6.9 -32.5 91.4 88.0 78.3
 GLU-447   TYR-448  15.5 15.1 14.1 21.0 155.9 166.0 -455.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-476   VAL-477  7.8 7.6 -23.4 25.3 141.7 139.7 116.9
 VAL-477   LYS-478  6.3 6.3 -8.8 11.6 108.7 110.8 -7.4
 LYS-478   LYS-479  4.6 4.7 -4.5 3.7 163.6 165.2 1.2
 LYS-479   MET-480  4.8 5.1 -13.3 17.1 108.2 114.6 39.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-494   VAL-495  9.2 8.6 2.0 -2.0 82.9 77.9 -63.7
 VAL-495   VAL-496  7.5 7.8 -3.9 -5.7 69.8 79.9 44.6
 VAL-496   ILE-497  10.9 11.6 0.1 -14.0 174.6 164.9 169.7
 ILE-497   MET-498  10.5 12.1 -4.0 -25.7 71.2 55.0 206.2
 MET-498   ARG-499  7.1 9.1 20.6 12.3 78.9 78.4 148.3
 ARG-499   ASP-500  9.5 9.5 7.7 -6.6 133.8 128.4 1.2
 ASP-500   TYR-501  12.4 12.5 33.8 -0.6 174.4 169.8 -373.2
 TYR-501   HIS-502  11.0 11.1 8.7 -1.8 109.2 106.1 130.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-512   TYR-513  5.7 5.4 -7.0 7.9 25.6 25.8 -24.2
 TYR-513   LEU-514  6.0 5.8 -14.5 12.8 49.3 45.0 -5.9
 LEU-514   VAL-515  4.2 4.5 -9.0 1.7 58.6 55.7 33.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-517   GLU-518  1.2 1.1 -17.3 -3.7 17.4 17.5 195.0
 GLU-518   LEU-519  1.7 1.5 13.9 -6.8 126.8 128.9 -11.8
 LEU-519   TRP-520  0.4 0.5 4.8 -1.4 130.9 130.0 7.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-521   VAL-522  2.2 1.9 6.8 -2.0 52.7 49.7 24.7
 VAL-522   MET-523  5.3 4.8 3.9 2.6 17.2 20.3 61.1
 MET-523   GLU-524  4.3 3.6 -7.1 8.1 131.1 131.9 8.9
 GLU-524   PHE-525  6.0 5.2 -6.5 -6.6 86.3 86.0 66.7
 GLU-524   PHE-525  6.0 5.2 -6.5 -6.6 86.3 86.0 66.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-524   PHE-525  6.0 5.2 -6.5 -6.6 86.3 86.0 66.7
 GLU-524   PHE-525  6.0 5.2 -6.5 -6.6 86.3 86.0 66.7
 PHE-525   LEU-526  8.0 7.5 8.9 -13.2 162.4 161.1 28.8
 LEU-526   GLU-527  7.7 7.8 17.3 -10.5 89.4 88.9 58.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees