Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-89   THR-90  2.8 2.7 2.2 -2.7 53.2 54.6 14.0
 THR-90   ILE-91  1.3 1.3 0.0 -4.5 14.8 14.9 -44.1
 ILE-91   THR-92  1.1 1.2 0.3 2.2 57.3 57.5 -16.0
 THR-92   TYR-93  2.8 2.8 -9.8 3.4 163.8 162.1 -77.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-103   PRO-104  9.3 9.9 -12.1 -1.8 20.8 29.9 156.7
 PRO-104   PHE-105  7.8 8.0 0.4 -9.5 140.5 147.4 35.3
 PHE-105   MET-106  8.9 8.8 1.2 -10.4 127.9 130.7 39.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-190   SER-191  8.0 8.0 8.2 -3.7 42.2 38.5 64.4
 SER-191   THR-192  9.5 9.3 1.0 8.8 45.8 47.8 73.6
 THR-192   SER-193  6.8 6.3 -7.6 -2.9 133.7 136.7 -80.9
 SER-193   ILE-194  5.6 5.7 2.9 -2.0 51.7 55.5 -22.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-214   GLY-215  7.4 7.4 -6.3 12.3 133.5 129.7 66.0
 GLY-215   TYR-216  5.4 5.5 -3.6 -1.6 98.5 96.2 7.5
 TYR-216   GLY-217  3.1 3.1 11.1 -10.1 113.1 112.7 19.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees