Serum Transferrin

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-86   SER-87  3.6 3.3 -28.7 40.7 165.7 163.3 19.2
 SER-87   LYS-88  2.4 1.9 8.0 -8.6 79.2 84.4 8.7
 LYS-88   GLU-89  1.1 1.7 17.6 -15.7 74.4 78.7 -7.1
 GLU-89   ASP-90  3.0 4.3 11.3 -10.4 140.2 141.9 -6.4
 ASP-90   PRO-91  4.5 5.6 -19.3 8.2 36.7 44.5 26.4
 PRO-91   GLN-92  2.6 3.0 7.0 -0.4 154.7 161.5 -18.0
 GLN-92   THR-93  2.6 2.7 7.7 -17.8 131.2 119.2 12.3
 THR-93   PHE-94  3.2 3.4 -58.4 26.2 23.8 15.5 45.6
 PHE-94   TYR-95  1.8 3.1 3.6 7.8 80.7 86.4 6.5
 TYR-95   TYR-96  3.4 4.2 -8.8 -8.4 38.5 35.9 27.5
 TYR-96   ALA-97  6.5 7.0 0.6 7.4 127.5 126.0 -11.1
 ALA-97   VAL-98  7.3 7.3 5.7 -4.0 97.2 99.8 2.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-243   ALA-244  10.0 10.0 7.1 -4.1 95.7 98.4 -1.3
 ALA-244   GLN-245  7.3 7.6 -15.8 9.4 30.1 23.8 11.2
 GLN-245   VAL-246  5.5 6.4 4.4 -2.6 66.8 78.7 1.8
 VAL-246   PRO-247  1.9 2.9 -29.3 -10.5 40.8 33.5 46.2
 PRO-247   SER-248  2.8 3.7 -18.3 1.4 69.7 90.5 5.7
 SER-248   HIS-249  3.5 3.3 138.4 -76.3 63.6 81.0 32.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-324   ASN-325  6.0 6.2 1.9 11.5 136.7 141.2 -26.8
 ASN-325   LEU-326  4.5 4.4 -50.7 39.0 76.9 75.5 17.0
 LEU-326   ARG-327  0.9 1.1 5.7 -14.5 132.9 110.5 0.9
 ARG-327   GLU-328  3.9 4.7 15.3 1.0 159.0 150.3 -6.7
 GLU-328   GLY-329  4.5 5.9 50.2 2.5 92.1 138.2 -33.3
 GLY-329   THR-330  4.0 3.2 -99.7 22.0 35.4 57.6 121.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees