Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 THR-107   LEU-108  8.0 7.6 5.6 2.8 110.7 113.1 9.6
 LEU-108   GLY-109  4.4 3.9 -14.4 23.8 137.9 138.2 25.1
 GLY-109   ILE-110  1.8 1.6 -43.0 29.4 62.6 67.2 24.9
 ILE-110   SER-111  3.4 3.1 -2.6 -6.7 58.9 64.4 35.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLY-208   GLY-209  11.5 11.5 22.2 -25.3 99.0 92.8 -24.1
 GLY-209   LEU-210  10.2 9.3 8.1 9.1 105.2 112.5 -31.0
 LEU-210   ILE-211  6.8 6.2 0.8 -1.5 157.5 157.6 13.9
 ILE-211   ASP-212  5.9 6.4 -146.8 138.7 69.3 45.9 -45.3
 ASP-212   SER-213  3.0 3.5 131.5 -95.9 71.3 61.6 78.1
 SER-213   LYS-214  4.3 4.0 -6.8 12.8 77.8 75.2 23.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 TRP-251   ARG-252  5.3 5.6 -7.9 -6.2 33.5 38.2 39.8
 ARG-252   GLY-253  5.1 5.4 0.2 -20.2 124.8 132.5 43.2
 GLY-253   ASN-254  2.2 2.4 -13.9 31.5 23.7 29.4 -85.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees