6-Phosphogluconate Dehydrogenase, Decarboxylating

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-97   ILE-98  7.2 7.6 -9.3 -0.1 56.3 56.6 47.8
 ILE-98   ASP-99  4.6 4.9 -3.0 6.9 92.5 94.6 -2.8
 ASP-99   GLY-100  3.3 3.4 -1.9 -4.3 36.1 36.2 62.7
 GLY-100   GLY-101  3.9 3.7 -3.0 0.6 90.3 90.0 -20.2
 GLY-101   ASN-102  6.7 6.6 -1.7 7.1 87.5 92.9 5.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-109   ARG-110  6.0 6.1 0.1 -4.7 149.5 147.7 48.5
 ARG-110   ARG-111  4.2 4.2 1.8 -0.5 83.6 82.2 27.8
 ARG-111   ASN-112  0.7 0.9 3.4 1.2 79.0 72.4 24.8
 ASN-112   ARG-113  3.9 4.0 -1.4 -0.5 33.9 41.3 51.9
 ARG-113   GLU-114  5.5 6.0 1.9 3.0 128.3 122.1 -29.8
 GLU-114   LEU-115  3.3 4.1 -7.2 2.9 109.2 115.8 -10.2
 LEU-115   SER-116  5.4 5.8 1.0 -7.8 90.3 82.5 4.7
 SER-116   ALA-117  8.1 8.5 2.7 -2.7 154.3 150.5 -8.1
 ALA-117   GLU-118  8.5 9.3 -4.9 11.9 81.0 76.7 5.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-121   PHE-122  8.7 9.9 -21.1 14.2 72.0 74.3 86.8
 PHE-122   ILE-123  5.1 6.2 16.9 -16.0 136.3 135.5 33.5
 ILE-123   GLY-124  4.0 4.4 7.8 -9.4 99.2 90.3 9.9
 GLY-124   THR-125  1.5 1.5 -6.7 0.5 18.0 23.6 47.5
 THR-125   GLY-126  1.6 1.6 4.6 -0.7 115.0 112.8 -13.3
 GLY-126   VAL-127  4.1 4.0 1.4 -2.5 32.3 32.3 -2.8
 GLY-126   VAL-127  4.1 4.0 1.4 -2.5 32.3 32.3 -2.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-126   VAL-127  4.1 4.0 1.4 -2.5 32.3 32.3 -2.8
 GLY-126   VAL-127  4.1 4.0 1.4 -2.5 32.3 32.3 -2.8
 VAL-127   SER-128  3.9 3.8 2.1 -5.3 60.1 63.5 -8.0
 SER-128   GLY-129  6.4 6.5 -6.3 18.3 154.9 158.3 93.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-137   PRO-138  3.0 3.1 8.7 -0.9 61.7 64.7 45.7
 PRO-138   SER-139  2.7 2.9 0.9 2.3 81.2 80.4 36.3
 SER-139   ILE-140  3.2 3.3 3.5 -6.4 18.1 19.9 -25.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-143   GLY-144  6.6 6.7 6.8 -6.5 138.6 136.9 -31.8
 GLY-144   GLN-145  7.3 7.6 -4.1 -6.2 87.8 90.3 35.8
 GLN-145   LYS-146  10.4 10.9 11.3 1.2 23.4 25.1 117.2
 LYS-146   GLU-147  12.7 13.0 5.0 6.5 76.5 85.6 35.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-151   VAL-152  13.7 13.0 -7.1 -1.2 60.9 53.6 31.0
 VAL-152   ALA-153  10.6 10.0 -1.9 4.0 28.3 29.7 -9.7
 ALA-153   PRO-154  10.4 10.0 -0.7 -2.7 33.6 35.2 41.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-156   THR-157  6.7 6.3 2.2 3.5 26.9 25.1 69.0
 THR-157   LYS-158  7.7 7.4 -1.4 1.7 137.5 135.2 -15.0
 LYS-158   ILE-159  8.4 8.2 1.5 -8.5 83.4 80.2 -20.0
 ILE-159   ALA-160  5.9 5.7 1.4 -1.9 100.4 100.0 22.3
 ILE-159   ALA-160  5.9 5.7 1.4 -1.9 100.4 100.0 22.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-159   ALA-160  5.9 5.7 1.4 -1.9 100.4 100.0 22.3
 ILE-159   ALA-160  5.9 5.7 1.4 -1.9 100.4 100.0 22.3
 ALA-160   ALA-161  2.7 2.4 1.7 0.3 161.1 164.4 -17.9
 ALA-161   VAL-162  0.7 0.6 0.1 0.4 108.9 108.5 137.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees