Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 SER-108   LEU-109  5.6 5.7 0.0 -14.3 128.2 130.9 49.1
 LEU-109   GLY-110  2.1 2.2 12.6 -2.5 56.1 60.1 -0.4
 GLY-110   ILE-111  1.6 1.7 -9.8 -3.1 51.7 45.6 60.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LEU-191   LEU-192  9.9 10.2 -2.8 0.2 85.3 85.6 -18.8
 LEU-192   GLU-193  7.2 7.5 -5.3 -13.5 70.7 67.8 35.0
 GLU-193   SER-194  4.3 4.5 4.4 13.8 53.7 51.0 49.7
 SER-194   THR-195  1.1 1.1 -7.1 9.2 130.3 127.8 22.0
 THR-195   MET-196  2.6 3.1 -5.2 -5.2 149.9 148.8 -65.0
 MET-196   ASN-197  3.8 4.4 3.3 -2.9 61.1 55.0 10.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLY-212   GLY-213  10.8 10.9 18.8 -18.4 122.1 117.7 -17.3
 GLY-213   ASN-214  9.0 8.7 16.0 -12.2 102.0 105.9 -26.0
 ASN-214   LEU-215  5.7 5.6 -14.1 15.5 39.0 35.4 -1.2
 LEU-215   ASP-216  7.1 7.3 10.4 -14.0 147.6 148.0 17.2
 ASP-216   SER-217  4.2 4.3 -6.9 6.6 104.6 103.1 8.1
 SER-217   LYS-218  0.6 0.8 1.1 -24.7 106.4 112.1 46.0
 LYS-218   GLY-219  3.2 3.0 10.4 -1.3 64.1 54.9 8.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees