Parm

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-152   GLY-153  6.4 6.4 17.7 -7.9 32.5 27.4 35.7
 GLY-153   TYR-154  3.4 3.8 -3.2 7.0 121.6 126.3 11.8
 TYR-154   GLU-155  5.4 5.7 3.7 14.0 14.8 19.6 84.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-300   PHE-301  7.7 7.1 -0.5 -5.3 158.2 153.8 -32.3
 PHE-301   PHE-302  9.7 8.8 1.7 -9.3 82.7 81.5 -10.5
 PHE-302   LYS-303  8.9 7.9 6.0 24.7 37.4 35.0 101.7
 LYS-303   THR-304  11.7 10.5 -90.0 57.8 73.1 88.3 72.5
 THR-304   ASN-305  14.0 10.0 -161.5 51.0 119.7 137.8 -319.6
 ASN-305   ASN-306  17.6 12.3 109.8 4.2 46.3 110.9 71.0
 ASN-306   SER-307  16.8 14.8 -86.6 -115.9 123.8 138.7 718.0
 SER-307   GLN-308  13.8 16.0 -145.7 1.3 149.1 142.5 -506.9
 GLN-308   TYR-309  14.4 15.3 -2.7 14.9 81.7 84.2 -14.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees