Poly(a) Polymerase Alpha
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASN-69
ASN-70
12.1
12.3
-2.2
0.9
73.2
74.8
-30.0
ASN-70
LEU-71
15.6
15.8
6.5
-7.0
106.2
106.8
-18.5
LEU-71
VAL-72
17.5
17.5
1.0
0.0
161.2
161.0
-40.9
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ILE-90
GLU-91
21.9
21.8
-1.8
2.1
49.6
47.1
56.8
GLU-91
ASN-92
21.8
21.7
-9.5
7.2
88.8
84.4
44.0
ASN-92
VAL-93
18.2
18.0
1.3
5.1
85.4
85.0
-0.1
VAL-93
GLY-94
16.4
16.4
-0.6
-5.9
48.1
48.6
265.5
GLY-94
GLY-95
14.6
14.5
4.9
-24.0
113.8
111.0
275.1
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ILE-97
PHE-98
8.7
8.5
12.7
-11.3
85.0
89.3
159.4
PHE-98
THR-99
5.4
5.1
-28.7
28.9
132.2
128.8
-23.4
THR-99
PHE-100
5.0
4.8
-0.5
-0.1
71.2
68.8
90.3
PHE-100
GLY-101
6.4
6.1
9.7
-4.3
43.0
43.8
247.8
GLY-101
SER-102
9.1
9.0
19.4
-20.4
36.6
36.6
-75.3
SER-102
TYR-103
9.0
9.0
2.2
-1.6
70.5
68.7
-34.9
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ALA-112
ASP-113
11.1
11.5
-1.0
4.3
123.2
116.9
42.5
ASP-113
ILE-114
11.8
11.7
23.4
-20.2
44.2
56.5
-9.9
ILE-114
ASP-115
9.5
9.2
-12.5
8.2
154.5
155.2
-147.4
ASP-115
ALA-116
10.1
9.9
5.2
-2.2
55.2
56.4
128.0
ALA-116
LEU-117
9.3
9.0
-3.2
7.5
152.8
153.0
199.2
LEU-117
CYS-118
9.7
9.4
-12.1
12.7
101.9
104.3
-92.0
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
PRO-155
VAL-156
19.6
19.5
2.5
1.0
137.9
136.7
-107.5
VAL-156
ILE-157
18.6
18.3
7.2
-5.8
128.7
125.5
89.7
ILE-157
LYS-158
19.3
19.1
-1.9
-0.8
32.5
29.7
129.6
LYS-158
LEU-159
18.7
18.8
-5.4
-0.7
47.2
45.6
51.6
PHE-161
ASP-162
15.3
15.4
-3.1
3.4
28.5
33.5
40.7
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
GLU-165
ILE-166
14.3
14.2
5.8
6.5
147.4
148.0
-632.2
ILE-166
ASP-167
13.3
13.3
11.5
-7.7
140.1
139.8
-38.6
ASP-167
ILE-168
14.7
14.2
-0.9
-3.1
38.5
41.8
147.9
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
CYS-204
ARG-205
6.4
6.5
1.9
-4.7
57.3
57.3
-58.6
ARG-205
VAL-206
6.8
6.8
5.7
-3.1
114.3
113.2
65.3
VAL-206
THR-207
10.0
9.9
-4.6
4.7
37.3
39.8
-55.8
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees