Glycogen [Starch] Synthase Isoform 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-199   TYR-200  2.9 3.5 15.2 -18.1 21.9 23.7 -20.8
 TYR-200   LEU-201  3.5 3.9 13.9 -10.0 69.0 66.3 8.1
 LEU-201   CYS-202  0.2 0.2 1.7 3.4 111.3 108.9 18.4
 CYS-202   ALA-203  2.9 2.8 -9.9 4.8 104.1 109.2 1.1
 ALA-203   SER-204  5.3 5.5 -0.2 -13.8 143.9 147.9 -93.9
 SER-204   GLY-205  5.4 5.3 -4.7 -0.4 82.7 87.0 -58.7
 GLY-205   SER-206  7.7 6.8 21.5 20.5 53.8 39.5 219.2
 SER-206   PHE-207  8.0 5.7 38.6 -104.5 104.1 99.0 201.2
 PHE-207   ASP-208  6.7 7.3 36.6 2.7 147.7 168.0 -273.1
 ASP-208   PHE-209  9.3 9.2 9.8 -0.4 114.6 112.6 -8.1
 PHE-209   TYR-210  6.7 6.4 5.5 -0.6 127.3 133.4 -23.7
 TYR-210   ASN-211  9.1 8.6 -26.4 24.6 104.4 98.5 -12.8
 ASN-211   CYS-212  12.3 12.1 1.1 9.5 36.7 39.2 127.6
 CYS-212   LEU-213  11.4 11.2 -17.0 3.9 93.3 98.3 -112.5
 LEU-213   GLU-214  9.2 9.2 -10.2 13.9 93.7 105.2 -31.4
 GLU-214   SER-215  12.8 12.6 -7.0 15.9 164.9 167.5 75.1
 SER-215   VAL-216  12.4 12.3 -19.3 13.7 114.9 119.2 -2.0
 VAL-216   ASP-217  9.4 9.3 0.4 2.9 76.7 79.8 -22.3
 ASP-217   VAL-218  10.6 10.9 9.7 -0.5 111.4 109.1 0.4
 VAL-218   ASP-219  10.3 10.5 -4.0 3.0 124.3 130.4 24.0
 ASP-219   HIS-220  11.9 12.3 0.0 -28.6 129.8 131.9 -92.8
 HIS-220   GLU-221  9.1 9.6 36.9 -5.7 116.0 109.0 39.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-269   GLY-270  4.6 4.7 14.3 -21.5 149.9 150.9 75.1
 GLY-270   LEU-271  4.5 4.6 6.7 1.4 97.4 95.3 -27.8
 LEU-271   ASN-272  6.2 6.6 1.7 1.9 161.7 154.3 -15.5
 ASN-272   VAL-273  8.2 9.0 -7.1 2.7 69.1 56.1 24.0
 VAL-273   ILE-274  7.0 7.5 -10.7 -8.8 37.0 33.6 102.4
 ILE-274   LYS-275  10.1 10.5 -25.5 29.5 54.0 48.8 -86.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-595   LEU-596  2.0 2.1 -0.3 -2.0 51.4 49.1 31.8
 LEU-596   LEU-597  2.8 2.7 -7.5 -2.8 38.3 44.1 38.3
 LEU-597   ASP-598  0.7 0.9 6.7 8.6 72.0 66.9 48.0
 ASP-598   TRP-599  3.0 3.0 -10.0 -1.8 79.9 73.2 12.8
 TRP-599   LYS-600  6.2 6.4 7.0 -6.1 46.0 46.0 -30.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees