N-Acetylgalactosamine Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-5   PRO-6  4.6 4.7 6.5 3.6 124.4 125.3 -87.8
 PRO-6   ALA-7  2.9 3.0 6.5 0.1 100.7 99.6 39.4
 ALA-7   THR-8  1.0 0.9 8.0 -9.1 162.0 153.0 60.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-24   MET-25  3.7 4.0 0.6 -9.1 62.8 60.8 -62.3
 MET-25   PHE-26  1.4 1.1 11.0 -1.8 102.8 104.1 8.5
 PHE-26   ASN-27  2.0 2.1 -6.1 7.0 123.6 129.9 -10.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-452   LEU-453  6.1 6.0 1.4 -1.6 80.1 80.0 -15.5
 LEU-453   VAL-454  2.4 2.2 -3.9 -1.8 39.8 43.1 70.5
 VAL-454   LEU-455  1.2 1.4 11.7 -5.6 106.9 108.0 -11.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees