Soluble Tumor Necrosis Factor Receptor 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-97   CYS-98  4.6 4.1 23.0 -42.6 124.9 131.5 13.3
 CYS-98   ARG-99  4.4 4.4 32.0 -14.1 122.5 127.5 -6.2
 ARG-99   LYS-100  7.7 6.9 8.7 22.4 154.6 127.2 -37.7
 LYS-100   ASN-101  8.2 7.3 -165.9 26.2 38.2 46.5 62.2
 ASN-101   GLN-102  5.7 4.9 -90.1 -14.1 87.1 108.6 -6.1
 GLN-102   TYR-103  3.0 2.5 2.8 -28.4 75.2 72.1 8.4
 TYR-103   ARG-104  0.7 1.1 8.0 -0.9 27.4 33.2 -1.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-113   CYS-114  4.7 5.6 -21.6 25.2 49.7 35.9 -20.0
 CYS-114   PHE-115  4.2 4.2 2.3 6.1 141.8 141.3 28.4
 PHE-115   ASN-116  4.9 5.4 -4.6 26.2 40.7 41.6 -32.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees