Pyruvate Kinase, M2 Isozyme

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-114   GLY-115  7.8 7.4 123.4 -146.6 104.9 80.1 -23.3
 GLY-115   PRO-116  4.6 4.4 29.9 4.5 99.9 109.1 -32.9
 PRO-116   GLU-117  5.7 6.1 -63.4 40.9 17.4 18.9 100.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-217   PRO-218  9.5 9.8 -2.7 -14.3 44.4 54.0 38.8
 PRO-218   ALA-219  7.7 7.8 -11.0 5.1 108.4 100.6 1.7
 ALA-219   VAL-220  4.4 4.5 -19.6 22.1 87.7 61.2 5.3
 VAL-220   SER-221  3.3 3.5 -42.5 13.0 83.9 77.9 43.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees