Akap9-Braf Fusion Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-486   VAL-487  10.8 10.4 9.5 12.0 36.0 44.0 96.1
 VAL-487   THR-488  8.1 7.6 10.8 -20.8 63.3 48.3 2.7
 THR-488   ALA-489  8.6 8.1 1.4 2.4 78.6 67.6 35.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-508   ARG-509  5.7 6.8 -10.1 -2.9 125.9 124.4 36.2
 ARG-509   HIS-510  4.5 4.6 29.9 4.7 28.8 24.1 174.7
 HIS-510   VAL-511  3.7 4.1 9.3 5.3 80.3 71.1 15.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees