Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-41   VAL-42  3.2 2.9 4.2 -0.8 102.9 100.7 2.8
 VAL-42   MET-43  3.7 3.2 -0.3 -24.1 30.8 32.3 62.1
 MET-43   PHE-44  2.3 1.9 26.0 -4.7 82.9 88.6 -8.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-61   MET-62  8.2 8.2 -6.6 -3.6 113.9 118.0 -0.5
 MET-62   ASP-63  4.6 5.1 26.9 7.3 29.2 38.3 91.8
 ASP-63   PRO-64  3.3 3.2 -16.7 5.5 85.1 71.2 11.8
 PRO-64   GLU-65  1.6 2.7 -3.7 12.7 77.4 78.4 -12.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees