DNA Ligase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 TYR-2271   ARG-2272  41.5 42.1 11.3 -18.5 13.7 19.9 -179.5
 ARG-2272   ARG-2273  41.8 42.5 -14.7 22.5 108.2 103.1 110.4
 ARG-2273   PHE-2274  43.8 44.8 17.7 -17.1 105.1 104.8 132.4
 PHE-2274   LEU-2275  41.3 41.7 -16.6 16.4 125.5 128.7 -44.8
 LEU-2275   ALA-2276  38.4 38.9 23.3 -20.1 26.7 32.9 139.3
 ALA-2276   GLN-2277  40.3 40.5 2.0 -1.0 91.8 98.6 111.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ARG-2278   HIS-2279  37.3 36.7 43.6 -76.1 113.8 102.2 656.1
 HIS-2279   ALA-2280  36.6 36.0 14.4 3.6 89.6 96.0 128.2
 ALA-2280   LEU-2281  39.9 39.5 14.0 -21.7 25.9 29.4 -232.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 PRO-2317   ALA-2318  31.6 31.6 61.9 3.0 74.0 84.2 403.7
 ALA-2318   GLU-2319  28.2 27.9 20.6 -18.5 57.9 20.2 -28.2
 GLU-2319   GLU-2320  26.4 26.8 -56.0 6.4 88.1 91.2 -13.4
 GLU-2320   LYS-2321  22.6 23.1 61.1 -53.7 49.8 43.1 127.5
 LYS-2321   GLU-2322  22.1 21.5 -12.0 22.6 107.9 104.0 236.5
 GLU-2322   THR-2323  18.6 18.2 -14.5 -8.9 9.4 11.2 723.9
 GLU-2322   THR-2323  18.6 18.2 -14.5 -8.9 9.4 11.2 723.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLU-2322   THR-2323  18.6 18.2 -14.5 -8.9 9.4 11.2 723.9
 GLU-2322   THR-2323  18.6 18.2 -14.5 -8.9 9.4 11.2 723.9
 THR-2323   ARG-2324  16.8 16.5 -5.0 -0.6 87.9 89.3 -81.4
 ARG-2324   LEU-2325  13.3 13.0 -8.4 7.3 75.9 75.9 -217.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 PHE-2330   GLN-2331  18.9 18.7 4.3 -1.8 73.0 69.2 72.9
 GLN-2331   VAL-2332  22.7 22.5 18.0 -17.4 123.7 123.7 43.0
 VAL-2332   GLY-2333  25.5 25.4 2.4 18.1 103.6 105.0 -94.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 VAL-2338   THR-2339  22.7 22.9 -24.5 40.2 125.5 115.5 113.9
 THR-2339   PRO-2340  21.2 21.6 11.5 -27.8 115.0 115.9 152.0
 PRO-2340   VAL-2341  17.9 18.1 -15.3 28.4 79.1 80.6 -246.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLU-2345   PRO-2346  17.2 16.4 0.5 -13.4 102.1 97.0 31.6
 PRO-2346   VAL-2347  21.0 20.2 15.6 -6.8 139.3 130.1 -192.9
 VAL-2347   PHE-2348  22.3 21.9 32.5 -30.1 107.5 104.1 86.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ILE-2365   GLU-2366  12.2 12.4 -1.1 -4.3 119.9 122.5 -36.7
 GLU-2366   GLU-2367  10.6 10.8 2.5 10.6 42.5 39.4 307.8
 GLU-2367   LEU-2368  10.3 10.9 -21.2 11.4 75.7 76.4 -89.2
 LEU-2368   ASP-2369  10.0 10.1 5.8 -6.5 126.5 125.3 -172.7
 ASP-2369   ILE-2370  7.1 7.2 1.1 -6.0 148.4 142.8 47.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ARG-2371   ILE-2372  6.0 6.2 29.6 -12.1 139.0 142.8 -459.8
 ILE-2372   GLY-2373  7.3 6.8 -50.6 47.4 77.6 82.1 -69.0
 GLY-2373   ASP-2374  6.1 6.2 -22.8 25.8 139.2 135.1 133.5
 ASP-2374   TRP-2375  7.8 7.8 -2.4 6.8 82.0 83.3 36.7
 TRP-2375   VAL-2376  11.3 11.4 2.0 5.0 34.9 39.6 166.7
 VAL-2376   LEU-2377  13.5 13.4 -29.0 24.0 96.2 102.2 -30.2
 LEU-2377   VAL-2378  16.9 16.5 -7.6 6.1 91.9 89.1 -66.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLY-2398   GLU-2399  4.3 4.7 40.7 -44.5 38.8 39.9 -89.6
 GLU-2399   GLU-2400  3.1 2.9 -31.0 56.5 79.1 94.6 -139.8
 GLU-2400   ARG-2401  2.0 2.1 37.4 -18.7 100.3 90.2 -3.4
 ARG-2401   PRO-2402  3.4 3.5 0.4 -16.9 129.7 131.0 397.3
 PRO-2402   ILE-2403  6.0 6.3 -74.8 73.2 116.0 115.7 -160.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees